HCSGD entry for UPF3A

1. General information

Official gene symbolUPF3A
Entrez ID65110
Gene full nameUPF3 regulator of nonsense transcripts homolog A (yeast)
Other gene symbolsHUPF3A RENT3A UPF3
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000166Nucleotide bindingIEAmolecular_function
GO:0000184Nuclear-transcribed mRNA catabolic process, nonsense-mediated decayIDA NAS TASbiological_process
GO:0003723RNA bindingIEAmolecular_function
GO:0005487Nucleocytoplasmic transporter activityNASmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIDA NAScellular_component
GO:0005730NucleolusIDAcellular_component
GO:0005737CytoplasmIDA NAScellular_component
GO:0005829CytosolTAScellular_component
GO:0005886Plasma membraneIDAcellular_component
GO:0006913Nucleocytoplasmic transportNASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0016070RNA metabolic processTASbiological_process
GO:0016071MRNA metabolic processTASbiological_process
GO:0035145Exon-exon junction complexIDA TAScellular_component
GO:0045727Positive regulation of translationIDAbiological_process
GO:0051028MRNA transportIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.55071533000.53299234070.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.2961363512
GSE13712_SHEARDown-0.1636090639
GSE13712_STATICUp0.0309619019
GSE19018Down-0.0290745585
GSE19899_A1Down-0.1408923527
GSE19899_A2Up0.2750541362
PubMed_21979375_A1Down-0.3225910596
PubMed_21979375_A2Down-0.0744861346
GSE35957Up0.1688608516
GSE36640Down-0.1267414056
GSE54402Up0.0077878070
GSE9593Up0.0442399218
GSE43922Down-0.0950389968
GSE24585Up0.3012468612
GSE37065Down-0.0525736140
GSE28863_A1Up0.1496847786
GSE28863_A2Down-0.0235647559
GSE28863_A3Up0.0457129964
GSE28863_A4Up0.1364832822
GSE48662Down-0.2310990688

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-484MIMAT0002174MIRT042322CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.