HCSGD entry for FNDC3B
1. General information
| Official gene symbol | FNDC3B |
|---|---|
| Entrez ID | 64778 |
| Gene full name | fibronectin type III domain containing 3B |
| Other gene symbols | FAD104 PRO4979 YVTM2421 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0045600 | Positive regulation of fat cell differentiation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4109385092 | 0.6759014133 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.5702769630 |
| GSE13712_SHEAR | Up | 0.0610668717 |
| GSE13712_STATIC | Up | 0.0305179890 |
| GSE19018 | Down | -0.1011196585 |
| GSE19899_A1 | Down | -0.0668027215 |
| GSE19899_A2 | Up | 0.3368180254 |
| PubMed_21979375_A1 | Up | 0.1680935472 |
| PubMed_21979375_A2 | Up | 0.2590302292 |
| GSE35957 | Up | 0.1184093639 |
| GSE36640 | Up | 0.9053930656 |
| GSE54402 | Down | -0.1582169911 |
| GSE9593 | Up | 0.1636009080 |
| GSE43922 | Up | 0.1820139742 |
| GSE24585 | Down | -0.1647509033 |
| GSE37065 | Up | 0.0749697718 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.1264916467 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT001467 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT001467 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-143-3p | MIMAT0000435 | MIRT003060 | Luciferase reporter assay//qRT-PCR//Western blot | Functional MTI | 19472311 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT017981 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020764 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022697 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-1 | MIMAT0000416 | MIRT023814 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1 | MIMAT0000416 | MIRT023814 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024780 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026584 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027680 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028527 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029551 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-378a-3p | MIMAT0000732 | MIRT043898 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049179 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050229 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-129-5p | MIMAT0000242 | NA | hsa-miR-129-5p | 19487295 | |||
| hsa-miR-143-3p | MIMAT0000435 | 1 | hsa-miR-143 | {Western blot} | {overexpression by miRNA mimics tranfection} | 19472311 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
