HCSGD entry for SHOX

1. General information

Official gene symbolSHOX
Entrez ID6473
Gene full nameshort stature homeobox
Other gene symbolsGCFX PHOG SHOXY SS
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000976Transcription regulatory region sequence-specific DNA bindingIEAmolecular_function
GO:0001501Skeletal system developmentTASbiological_process
GO:0003700Sequence-specific DNA binding transcription factor activityIEAmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIEAcellular_component
GO:0006366Transcription from RNA polymerase II promoterTASbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.31144935220.92457628890.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0342718469
GSE13712_SHEARDown-0.0894795946
GSE13712_STATICDown-0.0146698416
GSE19018Up0.1285891635
GSE19899_A1Up0.0243938844
GSE19899_A2Up0.1957679748
PubMed_21979375_A1Up0.2270819029
PubMed_21979375_A2Up0.0928428309
GSE35957Up0.2674622646
GSE36640Down-0.0566752446
GSE54402Down-0.0975345124
GSE9593Up0.0570370820
GSE43922Up0.0949911484
GSE24585Down-0.1569796900
GSE37065Down-0.0604909845
GSE28863_A1--
GSE28863_A2--
GSE28863_A3--
GSE28863_A4--
GSE48662Up0.8952044261

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.