HCSGD entry for SGCB
1. General information
| Official gene symbol | SGCB |
|---|---|
| Entrez ID | 6443 |
| Gene full name | sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) |
| Other gene symbols | A3b LGMD2E SGC |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0007517 | Muscle organ development | IEA | biological_process |
| GO:0016010 | Dystrophin-associated glycoprotein complex | IDA | cellular_component |
| GO:0016012 | Sarcoglycan complex | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0035051 | Cardiocyte differentiation | IEA | biological_process |
| GO:0042383 | Sarcolemma | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0733053797 | 0.1584310816 | 0.5760942721 | 0.7692426674 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0436581720 |
| GSE13712_SHEAR | Down | -0.0258295946 |
| GSE13712_STATIC | Down | -0.0442346961 |
| GSE19018 | Down | -0.0675236454 |
| GSE19899_A1 | Down | -0.6913183475 |
| GSE19899_A2 | Down | -0.5436128077 |
| PubMed_21979375_A1 | Down | -1.0312633738 |
| PubMed_21979375_A2 | Down | -0.9769123130 |
| GSE35957 | Up | 0.1268391461 |
| GSE36640 | Up | 0.6840767573 |
| GSE54402 | Down | -0.3698621079 |
| GSE9593 | Up | 0.5483748480 |
| GSE43922 | Down | -0.1697589296 |
| GSE24585 | Up | 0.5740864708 |
| GSE37065 | Up | 0.3426769431 |
| GSE28863_A1 | Up | 0.8177920558 |
| GSE28863_A2 | Up | 1.5119089990 |
| GSE28863_A3 | Down | -0.0416378329 |
| GSE28863_A4 | Down | -0.2213008337 |
| GSE48662 | Up | 0.3417076419 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-590-3p | MIMAT0004801 | MIRT016183 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024317 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026183 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030684 | Microarray | Functional MTI (Weak) | 18591254 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
