HCSGD entry for SFSWAP
1. General information
| Official gene symbol | SFSWAP |
|---|---|
| Entrez ID | 6433 |
| Gene full name | splicing factor, suppressor of white-apricot homolog (Drosophila) |
| Other gene symbols | SFRS8 SWAP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0006376 | MRNA splice site selection | TAS | biological_process |
| GO:0006396 | RNA processing | IEA | biological_process |
| GO:0006397 | MRNA processing | TAS | biological_process |
| GO:0048025 | Negative regulation of mRNA splicing, via spliceosome | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8243984195 | 0.2493632651 | 0.9999902473 | 0.9590832554 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0717981760 |
| GSE13712_SHEAR | Down | -0.0981504988 |
| GSE13712_STATIC | Down | -0.1584966042 |
| GSE19018 | Down | -0.1299170323 |
| GSE19899_A1 | Down | -0.1415313477 |
| GSE19899_A2 | Up | 0.4660995407 |
| PubMed_21979375_A1 | Down | -0.2154149125 |
| PubMed_21979375_A2 | Up | 0.2457037115 |
| GSE35957 | Down | -0.4419368562 |
| GSE36640 | Down | -0.6294565351 |
| GSE54402 | Down | -0.0978145297 |
| GSE9593 | Down | -0.3267610080 |
| GSE43922 | Down | -0.0005150951 |
| GSE24585 | Down | -0.1857709117 |
| GSE37065 | Down | -0.0708888909 |
| GSE28863_A1 | Up | 0.3114743138 |
| GSE28863_A2 | Up | 0.1294524410 |
| GSE28863_A3 | Up | 0.0234597486 |
| GSE28863_A4 | Up | 0.1289110573 |
| GSE48662 | Down | -0.1376657986 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-183-5p | MIMAT0000261 | MIRT047090 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052638 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
