HCSGD entry for PDLIM2
1. General information
| Official gene symbol | PDLIM2 |
|---|---|
| Entrez ID | 64236 |
| Gene full name | PDZ and LIM domain 2 (mystique) |
| Other gene symbols | MYSTIQUE SLIM |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005925 | Focal adhesion | IDA | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0015629 | Actin cytoskeleton | IDA | cellular_component |
| GO:0031005 | Filamin binding | IEA | molecular_function |
| GO:0032036 | Myosin heavy chain binding | IEA | molecular_function |
| GO:0051371 | Muscle alpha-actinin binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8221172866 | 0.0670241366 | 0.9999902473 | 0.4884114895 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3449398480 |
| GSE13712_SHEAR | Down | -0.2292876510 |
| GSE13712_STATIC | Up | 0.0488440662 |
| GSE19018 | Up | 0.5727404052 |
| GSE19899_A1 | Down | -0.4562388019 |
| GSE19899_A2 | Down | -0.1781115470 |
| PubMed_21979375_A1 | Down | -0.7209267887 |
| PubMed_21979375_A2 | Down | -0.2557178661 |
| GSE35957 | Up | 0.1926742104 |
| GSE36640 | Up | 0.3054903226 |
| GSE54402 | Down | -0.6361359699 |
| GSE9593 | Up | 0.2935320061 |
| GSE43922 | Down | -0.2669333300 |
| GSE24585 | Down | -0.0347059329 |
| GSE37065 | Down | -0.3515000112 |
| GSE28863_A1 | Down | -0.0947178462 |
| GSE28863_A2 | Down | -0.1765246110 |
| GSE28863_A3 | Up | 0.1232021562 |
| GSE28863_A4 | Down | -0.0760690176 |
| GSE48662 | Up | 0.3710120682 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-484 | MIMAT0002174 | MIRT041815 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
