HCSGD entry for ZFYVE20
1. General information
| Official gene symbol | ZFYVE20 |
|---|---|
| Entrez ID | 64145 |
| Gene full name | zinc finger, FYVE domain containing 20 |
| Other gene symbols | Rabenosyn-5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005768 | Endosome | NAS | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007596 | Blood coagulation | TAS | biological_process |
| GO:0008270 | Zinc ion binding | NAS | molecular_function |
| GO:0010008 | Endosome membrane | TAS | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016197 | Endosomal transport | NAS | biological_process |
| GO:0017137 | Rab GTPase binding | IEA | molecular_function |
| GO:0031901 | Early endosome membrane | IEA | cellular_component |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9156939288 | 0.2699644162 | 0.9999902473 | 0.9932532010 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0249915032 |
| GSE13712_SHEAR | Up | 0.1183653569 |
| GSE13712_STATIC | Up | 0.0649391922 |
| GSE19018 | Up | 0.0189468107 |
| GSE19899_A1 | Up | 0.0276010847 |
| GSE19899_A2 | Down | -0.2435556692 |
| PubMed_21979375_A1 | Down | -0.0997452943 |
| PubMed_21979375_A2 | Down | -0.2530362732 |
| GSE35957 | Down | -0.0923126396 |
| GSE36640 | Down | -0.2563091436 |
| GSE54402 | Up | 0.0511685123 |
| GSE9593 | Down | -0.0781531654 |
| GSE43922 | Down | -0.0168426337 |
| GSE24585 | Down | -0.0462718970 |
| GSE37065 | Up | 0.1008572925 |
| GSE28863_A1 | Up | 0.2445162767 |
| GSE28863_A2 | Down | -0.0083742422 |
| GSE28863_A3 | Down | -0.6050800767 |
| GSE28863_A4 | Down | -0.2962936513 |
| GSE48662 | Up | 0.0854793726 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30b-5p | MIMAT0000420 | MIRT023416 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025703 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-33a-5p | MIMAT0000091 | MIRT028206 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-22-3p | MIMAT0000077 | MIRT030636 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042592 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046649 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049486 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
