HCSGD entry for XYLT2
1. General information
| Official gene symbol | XYLT2 |
|---|---|
| Entrez ID | 64132 |
| Gene full name | xylosyltransferase II |
| Other gene symbols | PXYLT2 XT-II XT2 xylT-II |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0006024 | Glycosaminoglycan biosynthetic process | IEA NAS | biological_process |
| GO:0008375 | Acetylglucosaminyltransferase activity | IEA | molecular_function |
| GO:0015012 | Heparan sulfate proteoglycan biosynthetic process | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030158 | Protein xylosyltransferase activity | IEA NAS | molecular_function |
| GO:0030206 | Chondroitin sulfate biosynthetic process | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0527860796 | 0.9642051556 | 0.5025707220 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0064056948 |
| GSE13712_SHEAR | Up | 0.2115337258 |
| GSE13712_STATIC | Up | 0.3399584813 |
| GSE19018 | Up | 0.3811964874 |
| GSE19899_A1 | Up | 0.1748749061 |
| GSE19899_A2 | Up | 0.4937853963 |
| PubMed_21979375_A1 | Up | 0.5130080211 |
| PubMed_21979375_A2 | Up | 0.6767453925 |
| GSE35957 | Down | -0.1101989898 |
| GSE36640 | Up | 0.5899270806 |
| GSE54402 | Up | 0.1954590126 |
| GSE9593 | Down | -0.0579464677 |
| GSE43922 | Up | 0.5553931303 |
| GSE24585 | Down | -0.1240485441 |
| GSE37065 | Down | -0.0435941776 |
| GSE28863_A1 | Up | 0.2020309350 |
| GSE28863_A2 | Up | 0.0708385226 |
| GSE28863_A3 | Down | -0.4184672182 |
| GSE28863_A4 | Down | -0.0042838311 |
| GSE48662 | Up | 0.0546837791 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031129 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-18a-5p | MIMAT0000072 | MIRT031354 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-1226-3p | MIMAT0005577 | MIRT036433 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039948 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT048867 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049751 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050545 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052196 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
