HCSGD entry for LRRC4
1. General information
| Official gene symbol | LRRC4 |
|---|---|
| Entrez ID | 64101 |
| Gene full name | leucine rich repeat containing 4 |
| Other gene symbols | NGL-2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0045211 | Postsynaptic membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4833556590 | 0.7174570837 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0362247715 |
| GSE13712_SHEAR | Up | 0.0720952328 |
| GSE13712_STATIC | Down | -0.0964306421 |
| GSE19018 | Down | -0.1017157739 |
| GSE19899_A1 | Up | 0.0992968536 |
| GSE19899_A2 | Down | -0.0274291688 |
| PubMed_21979375_A1 | Up | 1.3543630829 |
| PubMed_21979375_A2 | Down | -0.1748650253 |
| GSE35957 | Up | 0.2181111767 |
| GSE36640 | Down | -0.2809192693 |
| GSE54402 | Up | 0.0537773185 |
| GSE9593 | Up | 0.1642980987 |
| GSE43922 | Up | 0.0684268629 |
| GSE24585 | Down | -0.3179729213 |
| GSE37065 | Down | -0.0227786087 |
| GSE28863_A1 | Down | -0.0147613509 |
| GSE28863_A2 | Up | 0.1156916766 |
| GSE28863_A3 | Up | 0.0655740941 |
| GSE28863_A4 | Up | 0.0257768981 |
| GSE48662 | Up | 0.0919429871 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016733 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022116 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
