HCSGD entry for SAMSN1
1. General information
| Official gene symbol | SAMSN1 |
|---|---|
| Entrez ID | 64092 |
| Gene full name | SAM domain, SH3 domain and nuclear localization signals 1 |
| Other gene symbols | HACS1 NASH1 SASH2 SH3D6B SLy2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001726 | Ruffle | IEA | cellular_component |
| GO:0001784 | Phosphotyrosine binding | IDA | molecular_function |
| GO:0002820 | Negative regulation of adaptive immune response | IEA ISS | biological_process |
| GO:0005634 | Nucleus | IDA IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0050732 | Negative regulation of peptidyl-tyrosine phosphorylation | IEA ISS | biological_process |
| GO:0050869 | Negative regulation of B cell activation | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6873936781 | 0.6538946849 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1600511806 |
| GSE13712_SHEAR | Up | 0.0489553028 |
| GSE13712_STATIC | Up | 0.0325360035 |
| GSE19018 | Up | 0.0558078666 |
| GSE19899_A1 | Down | -0.0091006334 |
| GSE19899_A2 | Up | 0.2611587379 |
| PubMed_21979375_A1 | Up | 0.5258532505 |
| PubMed_21979375_A2 | Up | 0.2644459451 |
| GSE35957 | Down | -0.0365078504 |
| GSE36640 | Up | 0.0222007463 |
| GSE54402 | Up | 0.0034307895 |
| GSE9593 | Down | -0.1144235662 |
| GSE43922 | Up | 0.0230953736 |
| GSE24585 | Down | -0.0384111310 |
| GSE37065 | Up | 0.0500495947 |
| GSE28863_A1 | Down | -0.2641404860 |
| GSE28863_A2 | Down | -0.3966606916 |
| GSE28863_A3 | Up | 0.0479573626 |
| GSE28863_A4 | Down | -0.0614511676 |
| GSE48662 | Down | -0.0170068507 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-132-3p | MIMAT0000426 | MIRT021787 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022936 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025914 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
