HCSGD entry for VIPAS39

1. General information

Official gene symbolVIPAS39
Entrez ID63894
Gene full nameVPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Other gene symbolsC14orf133 SPE-39 SPE39 VIPAR VPS16B hSPE-39
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005515Protein bindingIPImolecular_function
GO:0005737CytoplasmIDAcellular_component
GO:0005769Early endosomeIDAcellular_component
GO:0005770Late endosomeIDAcellular_component
GO:0006351Transcription, DNA-templatedIEAbiological_process
GO:0006355Regulation of transcription, DNA-templatedIEAbiological_process
GO:0006886Intracellular protein transportIMPbiological_process
GO:0007283SpermatogenesisIEAbiological_process
GO:0008333Endosome to lysosome transportIMPbiological_process
GO:0016023Cytoplasmic membrane-bounded vesicleIEAcellular_component
GO:0030154Cell differentiationIEAbiological_process
GO:0030897HOPS complexIDAcellular_component
GO:0055037Recycling endosomeIDAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.25315044640.70552120360.94274063381.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.1331160060
GSE13712_SHEARDown-0.1886375462
GSE13712_STATICUp0.0103810088
GSE19018Up0.2104200956
GSE19899_A1Up0.0328109734
GSE19899_A2Up0.0541537842
PubMed_21979375_A1Down-0.0888357099
PubMed_21979375_A2Up0.0732714478
GSE35957Up0.2088487446
GSE36640Up0.4432438308
GSE54402Up0.1891492719
GSE9593Up0.2094977706
GSE43922Up0.0602062253
GSE24585Up0.3798428278
GSE37065Down-0.0246587790
GSE28863_A1Down-0.0017408573
GSE28863_A2Down-0.0394894144
GSE28863_A3Down-0.8121772507
GSE28863_A4Down-0.0624494834
GSE48662Up0.2388519634

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-26b-5pMIMAT0000083MIRT029282MicroarrayFunctional MTI (Weak)19088304
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.