HCSGD entry for RRBP1
1. General information
| Official gene symbol | RRBP1 |
|---|---|
| Entrez ID | 6238 |
| Gene full name | ribosome binding protein 1 |
| Other gene symbols | ES/130 ES130 RRp hES |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004872 | Receptor activity | TAS | molecular_function |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005840 | Ribosome | TAS | cellular_component |
| GO:0006412 | Translation | TAS | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0030176 | Integral component of endoplasmic reticulum membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3463214430 | 0.6269268303 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0927405296 |
| GSE13712_SHEAR | Up | 0.1241791273 |
| GSE13712_STATIC | Down | -0.0337929673 |
| GSE19018 | Down | -0.2912132912 |
| GSE19899_A1 | Down | -0.1077807021 |
| GSE19899_A2 | Down | -0.2200271151 |
| PubMed_21979375_A1 | Up | 0.2396610026 |
| PubMed_21979375_A2 | Down | -0.0131457377 |
| GSE35957 | Down | -0.2472173236 |
| GSE36640 | Up | 0.4297772882 |
| GSE54402 | Down | -0.2496729243 |
| GSE9593 | Up | 0.0054027673 |
| GSE43922 | Up | 0.0826461973 |
| GSE24585 | Up | 0.0221235585 |
| GSE37065 | Down | -0.2991874653 |
| GSE28863_A1 | Up | 0.3434031581 |
| GSE28863_A2 | Up | 0.3809809251 |
| GSE28863_A3 | Up | 0.1910100447 |
| GSE28863_A4 | Up | 0.1364884325 |
| GSE48662 | Up | 0.5950166895 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT005285 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT016910 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025298 | Proteomics | Functional MTI (Weak) | 21566225 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043513 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049448 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052004 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 24763337 | We found that HP1beta mobility is similar in human embryonic stem cells (hES) and iPS cells where it is more mobile compared to fibroblasts; HP1beta is less mobile in senescent fibroblasts than in young (dividing) fibroblasts |
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