HCSGD entry for RPS25
1. General information
| Official gene symbol | RPS25 |
|---|---|
| Entrez ID | 6230 |
| Gene full name | ribosomal protein S25 |
| Other gene symbols | S25 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000028 | Ribosomal small subunit assembly | IEA | biological_process |
| GO:0000184 | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | TAS | biological_process |
| GO:0003723 | RNA binding | NAS | molecular_function |
| GO:0003735 | Structural constituent of ribosome | IEA | molecular_function |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0005840 | Ribosome | IDA NAS | cellular_component |
| GO:0006412 | Translation | IC NAS TAS | biological_process |
| GO:0006413 | Translational initiation | TAS | biological_process |
| GO:0006414 | Translational elongation | TAS | biological_process |
| GO:0006415 | Translational termination | TAS | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0015935 | Small ribosomal subunit | IDA | cellular_component |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0019058 | Viral life cycle | TAS | biological_process |
| GO:0019083 | Viral transcription | TAS | biological_process |
| GO:0022627 | Cytosolic small ribosomal subunit | IDA | cellular_component |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9346951332 | 0.2467131948 | 0.9999902473 | 0.9555830097 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0011422062 |
| GSE13712_SHEAR | Down | -0.0248305045 |
| GSE13712_STATIC | Up | 0.0775191056 |
| GSE19018 | Up | 0.0242272455 |
| GSE19899_A1 | Up | 0.0617453205 |
| GSE19899_A2 | Down | -0.0907874834 |
| PubMed_21979375_A1 | Down | -0.0511179102 |
| PubMed_21979375_A2 | Down | -0.0943491827 |
| GSE35957 | Down | -0.2152657643 |
| GSE36640 | Down | -0.1203236390 |
| GSE54402 | Down | -0.0223448076 |
| GSE9593 | Down | -0.0798670166 |
| GSE43922 | Down | -0.0673775398 |
| GSE24585 | Down | -0.3476226174 |
| GSE37065 | Down | -0.4545963909 |
| GSE28863_A1 | Up | 0.1390263068 |
| GSE28863_A2 | Up | 0.4503341224 |
| GSE28863_A3 | Down | -0.2737010813 |
| GSE28863_A4 | Up | 0.0779533755 |
| GSE48662 | Down | -0.2329583900 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031942 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-218-5p | MIMAT0000275 | MIRT046991 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049009 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
