HCSGD entry for RPS15
1. General information
| Official gene symbol | RPS15 |
|---|---|
| Entrez ID | 6209 |
| Gene full name | ribosomal protein S15 |
| Other gene symbols | RIG S15 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000028 | Ribosomal small subunit assembly | IEA | biological_process |
| GO:0000056 | Ribosomal small subunit export from nucleus | IMP | biological_process |
| GO:0000184 | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | TAS | biological_process |
| GO:0003677 | DNA binding | NAS | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0003735 | Structural constituent of ribosome | IEA | molecular_function |
| GO:0005634 | Nucleus | NAS | cellular_component |
| GO:0005654 | Nucleoplasm | NAS | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006364 | RRNA processing | IMP | biological_process |
| GO:0006412 | Translation | IC IEA TAS | biological_process |
| GO:0006413 | Translational initiation | TAS | biological_process |
| GO:0006414 | Translational elongation | TAS | biological_process |
| GO:0006415 | Translational termination | TAS | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0015935 | Small ribosomal subunit | IEA | cellular_component |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0019058 | Viral life cycle | TAS | biological_process |
| GO:0019083 | Viral transcription | TAS | biological_process |
| GO:0022627 | Cytosolic small ribosomal subunit | IDA IEA | cellular_component |
| GO:0042274 | Ribosomal small subunit biogenesis | IMP | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8887986589 | 0.5082052126 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0493311142 |
| GSE13712_SHEAR | Down | -0.1657771057 |
| GSE13712_STATIC | Down | -0.0843606494 |
| GSE19018 | Up | 0.0674314874 |
| GSE19899_A1 | Down | -0.0606505396 |
| GSE19899_A2 | Down | -0.0448465875 |
| PubMed_21979375_A1 | Up | 0.0172037757 |
| PubMed_21979375_A2 | Down | -0.1417758816 |
| GSE35957 | Down | -0.0695415859 |
| GSE36640 | Down | -0.3390994131 |
| GSE54402 | Up | 0.1273087548 |
| GSE9593 | Down | -0.0438996228 |
| GSE43922 | Up | 0.0504767905 |
| GSE24585 | Up | 0.0594963565 |
| GSE37065 | Down | -0.2034274978 |
| GSE28863_A1 | Up | 0.1186428481 |
| GSE28863_A2 | Up | 0.0444685884 |
| GSE28863_A3 | Up | 0.1185352495 |
| GSE28863_A4 | Up | 0.0893210292 |
| GSE48662 | Down | -0.2204762533 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022282 | Proteomics | Functional MTI (Weak) | 18668037 |
| hsa-miR-1229-3p | MIMAT0005584 | MIRT036366 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039745 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040870 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-505-3p | MIMAT0002876 | MIRT041056 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041653 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-100-5p | MIMAT0000098 | MIRT048590 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99a-5p | MIMAT0000097 | MIRT048661 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049096 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1260b | MIMAT0015041 | MIRT052682 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
