HCSGD entry for RPL39

1. General information

Official gene symbolRPL39
Entrez ID6170
Gene full nameribosomal protein L39
Other gene symbolsL39 RPL39P42 RPL39_23_1806
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000184Nuclear-transcribed mRNA catabolic process, nonsense-mediated decayTASbiological_process
GO:0003723RNA bindingTASmolecular_function
GO:0003735Structural constituent of ribosomeNAS TASmolecular_function
GO:0005829CytosolTAScellular_component
GO:0006412TranslationNAS TASbiological_process
GO:0006413Translational initiationTASbiological_process
GO:0006414Translational elongationTASbiological_process
GO:0006415Translational terminationTASbiological_process
GO:0006614SRP-dependent cotranslational protein targeting to membraneTASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0016032Viral processTASbiological_process
GO:0016070RNA metabolic processTASbiological_process
GO:0016071MRNA metabolic processTASbiological_process
GO:0019058Viral life cycleTASbiological_process
GO:0019083Viral transcriptionTASbiological_process
GO:0022625Cytosolic large ribosomal subunitIDA TAScellular_component
GO:0044267Cellular protein metabolic processTASbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.68829997720.94498692680.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0237022556
GSE13712_SHEARDown-0.0122275980
GSE13712_STATICUp0.0114971988
GSE19018Up0.1578078472
GSE19899_A1Up0.0408717992
GSE19899_A2Down-0.1080228490
PubMed_21979375_A1Up0.3001742242
PubMed_21979375_A2Up0.0725115562
GSE35957Up0.0481816663
GSE36640Up0.0712602433
GSE54402Up0.1070205633
GSE9593Down-0.0912858808
GSE43922--
GSE24585--
GSE37065--
GSE28863_A1--
GSE28863_A2--
GSE28863_A3--
GSE28863_A4--
GSE48662Up0.0158232798

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-155-5pMIMAT0000646MIRT020677ProteomicsFunctional MTI (Weak)18668040
hsa-miR-26b-5pMIMAT0000083MIRT029161MicroarrayFunctional MTI (Weak)19088304
hsa-miR-30c-5pMIMAT0000244MIRT047878CLASHFunctional MTI (Weak)23622248
hsa-miR-92a-3pMIMAT0000092MIRT048919CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.