HCSGD entry for RPL12
1. General information
| Official gene symbol | RPL12 |
|---|---|
| Entrez ID | 6136 |
| Gene full name | ribosomal protein L12 |
| Other gene symbols | L12 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000184 | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | TAS | biological_process |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0003735 | Structural constituent of ribosome | NAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006412 | Translation | NAS TAS | biological_process |
| GO:0006413 | Translational initiation | TAS | biological_process |
| GO:0006414 | Translational elongation | TAS | biological_process |
| GO:0006415 | Translational termination | TAS | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0019058 | Viral life cycle | TAS | biological_process |
| GO:0019083 | Viral transcription | TAS | biological_process |
| GO:0022625 | Cytosolic large ribosomal subunit | IDA | cellular_component |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9380671099 | 0.1237642681 | 0.9999902473 | 0.6766928334 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0185238995 |
| GSE13712_SHEAR | Down | -0.2177107722 |
| GSE13712_STATIC | Down | -0.1626413448 |
| GSE19018 | Up | 0.1291502497 |
| GSE19899_A1 | Down | -0.2525658626 |
| GSE19899_A2 | Down | -0.2113281480 |
| PubMed_21979375_A1 | Up | 0.3030500258 |
| PubMed_21979375_A2 | Down | -0.2957247087 |
| GSE35957 | Down | -0.4264874912 |
| GSE36640 | Down | -0.4576625432 |
| GSE54402 | Up | 0.2077286224 |
| GSE9593 | Down | -0.0208456665 |
| GSE43922 | Up | 0.0531458494 |
| GSE24585 | Up | 0.0138298022 |
| GSE37065 | Down | -0.4046149656 |
| GSE28863_A1 | Down | -0.0358885948 |
| GSE28863_A2 | Down | -0.2290650957 |
| GSE28863_A3 | Up | 0.0150175856 |
| GSE28863_A4 | Up | 0.0885347345 |
| GSE48662 | Down | -0.1034433771 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031402 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041418 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7g-5p | MIMAT0000414 | MIRT046558 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046650 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-218-5p | MIMAT0000275 | MIRT046988 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051475 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT051997 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
