HCSGD entry for RPL4

1. General information

Official gene symbolRPL4
Entrez ID6124
Gene full nameribosomal protein L4
Other gene symbolsL4
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000184Nuclear-transcribed mRNA catabolic process, nonsense-mediated decayTASbiological_process
GO:0003723RNA bindingTASmolecular_function
GO:0003735Structural constituent of ribosomeIEA NASmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005730NucleolusIDAcellular_component
GO:0005737CytoplasmIDAcellular_component
GO:0005829CytosolTAScellular_component
GO:0005840RibosomeIEAcellular_component
GO:0006412TranslationIEA NAS TASbiological_process
GO:0006413Translational initiationTASbiological_process
GO:0006414Translational elongationTASbiological_process
GO:0006415Translational terminationTASbiological_process
GO:0006614SRP-dependent cotranslational protein targeting to membraneTASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0016032Viral processTASbiological_process
GO:0016070RNA metabolic processTASbiological_process
GO:0016071MRNA metabolic processTASbiological_process
GO:0019058Viral life cycleTASbiological_process
GO:0019083Viral transcriptionTASbiological_process
GO:0022625Cytosolic large ribosomal subunitIDAcellular_component
GO:0030529Ribonucleoprotein complexIDAcellular_component
GO:0044267Cellular protein metabolic processTASbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.99937440830.01322234340.99999024730.2264315550

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954--
GSE13712_SHEAR--
GSE13712_STATIC--
GSE19018--
GSE19899_A1--
GSE19899_A2--
PubMed_21979375_A1--
PubMed_21979375_A2--
GSE35957--
GSE36640--
GSE54402--
GSE9593--
GSE43922Down-0.0907794244
GSE24585Down-0.0965684904
GSE37065Down-0.2750505652
GSE28863_A1--
GSE28863_A2--
GSE28863_A3--
GSE28863_A4--
GSE48662Down-0.5937112923

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-16-5pMIMAT0000069MIRT031387ProteomicsFunctional MTI (Weak)18668040
hsa-miR-1180-3pMIMAT0005825MIRT035943CLASHFunctional MTI (Weak)23622248
hsa-miR-1237-3pMIMAT0005592MIRT036248CLASHFunctional MTI (Weak)23622248
hsa-miR-744-5pMIMAT0004945MIRT037542CLASHFunctional MTI (Weak)23622248
hsa-miR-330-5pMIMAT0004693MIRT038237CLASHFunctional MTI (Weak)23622248
hsa-miR-454-3pMIMAT0003885MIRT039230CLASHFunctional MTI (Weak)23622248
hsa-miR-652-3pMIMAT0003322MIRT039546CLASHFunctional MTI (Weak)23622248
hsa-miR-423-3pMIMAT0001340MIRT042484CLASHFunctional MTI (Weak)23622248
hsa-miR-324-3pMIMAT0000762MIRT042914CLASHFunctional MTI (Weak)23622248
hsa-miR-186-5pMIMAT0000456MIRT045063CLASHFunctional MTI (Weak)23622248
hsa-let-7a-5pMIMAT0000062MIRT052435CLASHFunctional MTI (Weak)23622248
hsa-miR-1260bMIMAT0015041MIRT052730CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.