HCSGD entry for ROM1
1. General information
| Official gene symbol | ROM1 |
|---|---|
| Entrez ID | 6094 |
| Gene full name | retinal outer segment membrane protein 1 |
| Other gene symbols | ROM ROSP1 RP7 TSPAN23 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0042622 | Photoreceptor outer segment membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3036353178 | 0.5836958056 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0282497229 |
| GSE13712_SHEAR | Down | -0.2565149750 |
| GSE13712_STATIC | Down | -0.2629438681 |
| GSE19018 | Up | 0.0784312997 |
| GSE19899_A1 | Down | -0.1160513156 |
| GSE19899_A2 | Up | 0.1991699350 |
| PubMed_21979375_A1 | Up | 0.2333989593 |
| PubMed_21979375_A2 | Up | 0.2027122906 |
| GSE35957 | Down | -0.0305809532 |
| GSE36640 | Up | 0.5793628194 |
| GSE54402 | Down | -0.1063692832 |
| GSE9593 | Up | 0.0432281242 |
| GSE43922 | Up | 0.0247752735 |
| GSE24585 | Up | 0.0862835526 |
| GSE37065 | Up | 0.0864850675 |
| GSE28863_A1 | Up | 0.0612443784 |
| GSE28863_A2 | Down | -0.6566017292 |
| GSE28863_A3 | Up | 0.2276101853 |
| GSE28863_A4 | Up | 0.0843751603 |
| GSE48662 | Up | 0.6420937048 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022287 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028880 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
