HCSGD entry for RINT1
1. General information
| Official gene symbol | RINT1 |
|---|---|
| Entrez ID | 60561 |
| Gene full name | RAD50 interactor 1 |
| Other gene symbols | RINT-1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016192 | Vesicle-mediated transport | IEA | biological_process |
| GO:0031572 | G2 DNA damage checkpoint | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0282471905 | 0.3564778808 | 0.3906959012 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2386640200 |
| GSE13712_SHEAR | Up | 0.3129551924 |
| GSE13712_STATIC | Up | 0.3978347577 |
| GSE19018 | Down | -0.0222519563 |
| GSE19899_A1 | Up | 0.7236220552 |
| GSE19899_A2 | Up | 0.5257412939 |
| PubMed_21979375_A1 | Up | 1.1791320797 |
| PubMed_21979375_A2 | Up | 1.0176285082 |
| GSE35957 | Down | -0.3867020093 |
| GSE36640 | Up | 0.1159611574 |
| GSE54402 | Up | 0.6324267258 |
| GSE9593 | Down | -0.6249920117 |
| GSE43922 | Up | 0.5959258218 |
| GSE24585 | Down | -0.0250469087 |
| GSE37065 | Down | -0.1593192375 |
| GSE28863_A1 | Down | -0.0827165182 |
| GSE28863_A2 | Up | 0.4312367895 |
| GSE28863_A3 | Down | -1.1721878683 |
| GSE28863_A4 | Down | -0.2443877571 |
| GSE48662 | Down | -0.4747948822 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-3065-3p | MIMAT0015378 | MIRT052828 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 23634235 | Amongst the genes were IRAK3, SelS, HSPA5, HERPUD1, DNAJB9, SEPR1, C18orf55, ARF4, RINT1, NXT1, CADPS2, COG6, and GLRX5 |
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