HCSGD entry for NYX
1. General information
| Official gene symbol | NYX |
|---|---|
| Entrez ID | 60506 |
| Gene full name | nyctalopin |
| Other gene symbols | CLRP CSNB1 CSNB1A CSNB4 NBM1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005578 | Proteinaceous extracellular matrix | IEA | cellular_component |
| GO:0005622 | Intracellular | IDA | cellular_component |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0050896 | Response to stimulus | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6677196801 | 0.5550690817 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0482701074 |
| GSE13712_SHEAR | Down | -0.0635295756 |
| GSE13712_STATIC | Down | -0.1216919070 |
| GSE19018 | Up | 0.1438921608 |
| GSE19899_A1 | Down | -0.1762119928 |
| GSE19899_A2 | Up | 0.0768890217 |
| PubMed_21979375_A1 | Up | 0.0444046388 |
| PubMed_21979375_A2 | Down | -0.2691873946 |
| GSE35957 | Up | 0.1762317850 |
| GSE36640 | Up | 0.0530616224 |
| GSE54402 | Down | -0.0379014058 |
| GSE9593 | Down | -0.0952070636 |
| GSE43922 | Down | -0.0503708900 |
| GSE24585 | Up | 0.1929481486 |
| GSE37065 | Down | -0.1412810006 |
| GSE28863_A1 | Down | -0.2099693044 |
| GSE28863_A2 | Down | -0.1020371063 |
| GSE28863_A3 | Up | 0.4515146390 |
| GSE28863_A4 | Up | 0.0926854079 |
| GSE48662 | Up | 0.4500644721 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028759 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 26984996 | The F-box and leucine-rich repeat protein 10 (Fbxl10) gene encodes a protein that catalyzes demethylation of H3K4 and H3K36 |
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