HCSGD entry for RDH5
1. General information
| Official gene symbol | RDH5 |
|---|---|
| Entrez ID | 5959 |
| Gene full name | retinol dehydrogenase 5 (11-cis/9-cis) |
| Other gene symbols | 9cRDH HSD17B9 RDH1 SDR9C5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001523 | Retinoid metabolic process | TAS | biological_process |
| GO:0004745 | Retinol dehydrogenase activity | TAS | molecular_function |
| GO:0005788 | Endoplasmic reticulum lumen | IEA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | TAS | cellular_component |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0007603 | Phototransduction, visible light | TAS | biological_process |
| GO:0016491 | Oxidoreductase activity | IEA | molecular_function |
| GO:0042572 | Retinol metabolic process | IEA | biological_process |
| GO:0044297 | Cell body | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6349799970 | 0.4646810190 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0263710654 |
| GSE13712_SHEAR | Up | 0.0538898236 |
| GSE13712_STATIC | Up | 0.0244941943 |
| GSE19018 | Down | -0.1572878004 |
| GSE19899_A1 | Down | -0.0505071539 |
| GSE19899_A2 | Down | -0.0296842661 |
| PubMed_21979375_A1 | Down | -0.6615265887 |
| PubMed_21979375_A2 | Down | -0.3940932325 |
| GSE35957 | Down | -0.0643204210 |
| GSE36640 | Up | 0.0578188556 |
| GSE54402 | Down | -0.0181224486 |
| GSE9593 | Up | 0.5688611094 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.6342882388 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| NADH | DB00157 | NUTR00041 | DB01907 | EXPT02287 | DB03527 |
| Vitamin A | DB00162 | NUTR00007 | APRD00486 |
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018312 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
