HCSGD entry for RCN1
1. General information
| Official gene symbol | RCN1 |
|---|---|
| Entrez ID | 5954 |
| Gene full name | reticulocalbin 1, EF-hand calcium binding domain |
| Other gene symbols | PIG20 RCAL RCN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001701 | In utero embryonic development | IEA | biological_process |
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | IEA | cellular_component |
| GO:0043010 | Camera-type eye development | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3847471867 | 0.9415408115 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2316084968 |
| GSE13712_SHEAR | Up | 0.3091067774 |
| GSE13712_STATIC | Up | 0.1691706241 |
| GSE19018 | Down | -0.0273349100 |
| GSE19899_A1 | Down | -0.1759210585 |
| GSE19899_A2 | Up | 0.0845811929 |
| PubMed_21979375_A1 | Down | -0.0132151891 |
| PubMed_21979375_A2 | Up | 0.0642153907 |
| GSE35957 | Down | -0.2073136083 |
| GSE36640 | Up | 0.1503243771 |
| GSE54402 | Down | -0.0022669890 |
| GSE9593 | Up | 0.3540195810 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.1918754720 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025453 | Proteomics | Functional MTI (Weak) | 21566225 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
