HCSGD entry for RBM3
1. General information
| Official gene symbol | RBM3 |
|---|---|
| Entrez ID | 5935 |
| Gene full name | RNA binding motif (RNP1, RRM) protein 3 |
| Other gene symbols | IS1-RNPL RNPL |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | ISS | cellular_component |
| GO:0005737 | Cytoplasm | ISS | cellular_component |
| GO:0006396 | RNA processing | TAS | biological_process |
| GO:0006412 | Translation | IEA | biological_process |
| GO:0006417 | Regulation of translation | ISS | biological_process |
| GO:0009409 | Response to cold | IEA | biological_process |
| GO:0015934 | Large ribosomal subunit | ISS | cellular_component |
| GO:0030425 | Dendrite | ISS | cellular_component |
| GO:0035196 | Production of miRNAs involved in gene silencing by miRNA | IEA | biological_process |
| GO:0043023 | Ribosomal large subunit binding | IEA | molecular_function |
| GO:0045727 | Positive regulation of translation | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8995280346 | 0.0050628358 | 0.9999902473 | 0.1453205016 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3752222440 |
| GSE13712_SHEAR | Up | 0.5921400863 |
| GSE13712_STATIC | Up | 0.1993140482 |
| GSE19018 | Down | -0.6433447299 |
| GSE19899_A1 | Down | -0.5058734313 |
| GSE19899_A2 | Down | -0.2561827031 |
| PubMed_21979375_A1 | Down | -0.3007723148 |
| PubMed_21979375_A2 | Down | -0.9268089844 |
| GSE35957 | Up | 0.3384005029 |
| GSE36640 | Up | 0.2226868329 |
| GSE54402 | Down | -0.1543412438 |
| GSE9593 | Up | 0.4694785623 |
| GSE43922 | Down | -0.4771304129 |
| GSE24585 | Down | -0.4234393151 |
| GSE37065 | Down | -0.5915833806 |
| GSE28863_A1 | Down | -0.2214677785 |
| GSE28863_A2 | Down | -0.2760573713 |
| GSE28863_A3 | Down | -0.8727734021 |
| GSE28863_A4 | Up | 0.1952488981 |
| GSE48662 | Down | -1.1028539857 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029488 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047926 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
