HCSGD entry for RPRD1B
1. General information
| Official gene symbol | RPRD1B |
|---|---|
| Entrez ID | 58490 |
| Gene full name | regulation of nuclear pre-mRNA domain containing 1B |
| Other gene symbols | C20orf77 CREPT NET60 dJ1057B20.2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000993 | RNA polymerase II core binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0008284 | Positive regulation of cell proliferation | IDA | biological_process |
| GO:0010564 | Regulation of cell cycle process | IDA | biological_process |
| GO:0016591 | DNA-directed RNA polymerase II, holoenzyme | IDA | cellular_component |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IDA | biological_process |
| GO:0070940 | Dephosphorylation of RNA polymerase II C-terminal domain | IMP | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9141974849 | 0.3213822005 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0201902829 |
| GSE13712_SHEAR | Down | -0.0507621522 |
| GSE13712_STATIC | Down | -0.0460212128 |
| GSE19018 | Down | -0.2119526470 |
| GSE19899_A1 | Down | -0.4363585723 |
| GSE19899_A2 | Down | -0.0934680341 |
| PubMed_21979375_A1 | Down | -0.3186021619 |
| PubMed_21979375_A2 | Down | -0.2668823446 |
| GSE35957 | Up | 0.0171171339 |
| GSE36640 | Down | -0.1325140255 |
| GSE54402 | Down | -0.0742483136 |
| GSE9593 | Down | -0.0168484192 |
| GSE43922 | Up | 0.0107391274 |
| GSE24585 | Up | 0.4077598995 |
| GSE37065 | Up | 0.1115644672 |
| GSE28863_A1 | Down | -0.0049860905 |
| GSE28863_A2 | Up | 0.0724263188 |
| GSE28863_A3 | Down | -0.2766268906 |
| GSE28863_A4 | Up | 0.0949493964 |
| GSE48662 | Up | 0.0869677652 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020154 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022922 | Proteomics;Microarray | Non-Functional MTI (Weak) | 18668037 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027086 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028504 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031629 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-33a-5p | MIMAT0000091 | MIRT049853 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
