HCSGD entry for TRAPPC1
1. General information
| Official gene symbol | TRAPPC1 |
|---|---|
| Entrez ID | 58485 |
| Gene full name | trafficking protein particle complex 1 |
| Other gene symbols | BET5 MUM2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0005801 | Cis-Golgi network | IEA | cellular_component |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IEA | biological_process |
| GO:0030008 | TRAPP complex | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2361955587 | 0.1012461039 | 0.9197963160 | 0.6092957019 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0747296770 |
| GSE13712_SHEAR | Down | -0.1120959479 |
| GSE13712_STATIC | Down | -0.1658656510 |
| GSE19018 | Up | 0.5613275328 |
| GSE19899_A1 | Up | 0.1463714442 |
| GSE19899_A2 | Up | 1.0857072189 |
| PubMed_21979375_A1 | Up | 0.1089857137 |
| PubMed_21979375_A2 | Up | 0.7218236190 |
| GSE35957 | Down | -0.1324465522 |
| GSE36640 | Up | 0.2909065301 |
| GSE54402 | Down | -0.1041171589 |
| GSE9593 | Up | 0.1740220963 |
| GSE43922 | Down | -0.0000037898 |
| GSE24585 | Up | 0.0279974344 |
| GSE37065 | Down | -0.2087611022 |
| GSE28863_A1 | Down | -0.7147461673 |
| GSE28863_A2 | Down | -0.8780793940 |
| GSE28863_A3 | Down | -0.4126048164 |
| GSE28863_A4 | Down | -0.0078495802 |
| GSE48662 | Down | -0.0005130269 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| S-PALMITOYL-L-CYSTEINE | DB08342 | - |
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1224-5p | MIMAT0005458 | MIRT036554 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046518 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-197-3p | MIMAT0000227 | MIRT048144 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-18a-5p | MIMAT0000072 | MIRT050712 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052132 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
