HCSGD entry for PYGM
1. General information
| Official gene symbol | PYGM |
|---|---|
| Entrez ID | 5837 |
| Gene full name | phosphorylase, glycogen, muscle |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0005977 | Glycogen metabolic process | TAS | biological_process |
| GO:0005980 | Glycogen catabolic process | TAS | biological_process |
| GO:0006006 | Glucose metabolic process | TAS | biological_process |
| GO:0008184 | Glycogen phosphorylase activity | IEA | molecular_function |
| GO:0030170 | Pyridoxal phosphate binding | IEA | molecular_function |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5533616656 | 0.7096903347 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0844643706 |
| GSE13712_SHEAR | Up | 0.1193368212 |
| GSE13712_STATIC | Up | 0.0428363175 |
| GSE19018 | Up | 0.0388670845 |
| GSE19899_A1 | Down | -0.1149017816 |
| GSE19899_A2 | Up | 0.0212214088 |
| PubMed_21979375_A1 | Up | 0.3445507584 |
| PubMed_21979375_A2 | Down | -0.0153541415 |
| GSE35957 | Down | -0.0783687264 |
| GSE36640 | Up | 0.0021192138 |
| GSE54402 | Down | -0.1639810535 |
| GSE9593 | Down | -0.3838936499 |
| GSE43922 | Up | 0.0591516887 |
| GSE24585 | Up | 0.4161613646 |
| GSE37065 | Down | -0.0461184025 |
| GSE28863_A1 | Down | -0.1306366027 |
| GSE28863_A2 | Down | -0.0670441168 |
| GSE28863_A3 | Up | 0.2942979589 |
| GSE28863_A4 | Up | 0.1129395335 |
| GSE48662 | Down | -0.0238817012 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017225 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
