HCSGD entry for PYGB
1. General information
| Official gene symbol | PYGB |
|---|---|
| Entrez ID | 5834 |
| Gene full name | phosphorylase, glycogen; brain |
| Other gene symbols | GPBB |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | IEA TAS | biological_process |
| GO:0005980 | Glycogen catabolic process | NAS TAS | biological_process |
| GO:0006006 | Glucose metabolic process | TAS | biological_process |
| GO:0008184 | Glycogen phosphorylase activity | IEA NAS | molecular_function |
| GO:0030170 | Pyridoxal phosphate binding | IEA | molecular_function |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1072806048 | 0.8859663387 | 0.6802536256 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0572940217 |
| GSE13712_SHEAR | Up | 0.1422773986 |
| GSE13712_STATIC | Up | 0.1153830312 |
| GSE19018 | Up | 0.3884063961 |
| GSE19899_A1 | Up | 0.2819579265 |
| GSE19899_A2 | Down | -0.2336218805 |
| PubMed_21979375_A1 | Up | 0.2477194640 |
| PubMed_21979375_A2 | Up | 0.4824270535 |
| GSE35957 | Down | -0.2577736114 |
| GSE36640 | Up | 0.1314983118 |
| GSE54402 | Up | 0.0383311020 |
| GSE9593 | Up | 0.4956731897 |
| GSE43922 | Down | -0.0545990749 |
| GSE24585 | Up | 0.1464905805 |
| GSE37065 | Down | -0.0492443532 |
| GSE28863_A1 | Up | 0.1276700163 |
| GSE28863_A2 | Up | 0.0339304107 |
| GSE28863_A3 | Down | -0.5922808875 |
| GSE28863_A4 | Up | 0.2442167986 |
| GSE48662 | Up | 0.3279441978 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017293 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-1 | MIMAT0000416 | MIRT023564 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025360 | Proteomics | Functional MTI (Weak) | 21566225 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031538 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037640 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042171 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050597 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
