HCSGD entry for NEUROD4

1. General information

Official gene symbolNEUROD4
Entrez ID58158
Gene full nameneuronal differentiation 4
Other gene symbolsATH-3 ATH3 Atoh3 MATH-3 bHLHa4
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001764Neuron migrationIEAbiological_process
GO:0003677DNA bindingIEAmolecular_function
GO:0005634NucleusIEAcellular_component
GO:0006351Transcription, DNA-templatedIEAbiological_process
GO:0006355Regulation of transcription, DNA-templatedIEAbiological_process
GO:0007219Notch signaling pathwayIEAbiological_process
GO:0007405Neuroblast proliferationIEAbiological_process
GO:0010001Glial cell differentiationIEAbiological_process
GO:0035881Amacrine cell differentiationISSbiological_process
GO:0045165Cell fate commitmentIEAbiological_process
GO:0045597Positive regulation of cell differentiationISSbiological_process
GO:0046983Protein dimerization activityIEAmolecular_function
GO:0048666Neuron developmentIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.53738986740.81452791310.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0214555240
GSE13712_SHEARUp0.0374402926
GSE13712_STATICUp0.1291693260
GSE19018Up0.1161195170
GSE19899_A1Up0.0488326838
GSE19899_A2Up0.1516394101
PubMed_21979375_A1Down-0.1240742783
PubMed_21979375_A2Up0.1600279688
GSE35957Up0.3155591054
GSE36640Down-0.0176024062
GSE54402Up0.1322187976
GSE9593Up0.1671372970
GSE43922Up0.0145090651
GSE24585Down-0.0954835563
GSE37065Up0.0033662779
GSE28863_A1Down-0.0125425220
GSE28863_A2Down-0.2837884441
GSE28863_A3Up0.0689142549
GSE28863_A4Up0.0153494327
GSE48662Down-0.0084520744

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT017092MicroarrayFunctional MTI (Weak)18185580
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.