HCSGD entry for PTPN9
1. General information
| Official gene symbol | PTPN9 |
|---|---|
| Entrez ID | 5780 |
| Gene full name | protein tyrosine phosphatase, non-receptor type 9 |
| Other gene symbols | MEG2 PTPMEG2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004725 | Protein tyrosine phosphatase activity | IDA | molecular_function |
| GO:0004726 | Non-membrane spanning protein tyrosine phosphatase activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006470 | Protein dephosphorylation | TAS | biological_process |
| GO:0035335 | Peptidyl-tyrosine dephosphorylation | IDA TAS | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6999354774 | 0.6219551195 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0332189463 |
| GSE13712_SHEAR | Up | 0.1005974843 |
| GSE13712_STATIC | Down | -0.1541747605 |
| GSE19018 | Down | -0.2177287891 |
| GSE19899_A1 | Down | -0.1543398401 |
| GSE19899_A2 | Down | -0.0471264611 |
| PubMed_21979375_A1 | Up | 0.4325651476 |
| PubMed_21979375_A2 | Up | 0.1964625272 |
| GSE35957 | Up | 0.0652445430 |
| GSE36640 | Down | -0.3439798727 |
| GSE54402 | Up | 0.1975454880 |
| GSE9593 | Up | 0.0962896604 |
| GSE43922 | Down | -0.0122738888 |
| GSE24585 | Up | 0.0898178399 |
| GSE37065 | Up | 0.0512914639 |
| GSE28863_A1 | Up | 0.1766871949 |
| GSE28863_A2 | Down | -0.0258694152 |
| GSE28863_A3 | Down | -0.0895906085 |
| GSE28863_A4 | Down | -0.0704614978 |
| GSE48662 | Up | 0.1318648070 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-769-5p | MIMAT0003886 | MIRT016099 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT021174 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT023053 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT035526 | Luciferase reporter assay | Functional MTI | 23418360 |
| hsa-miR-93-3p | MIMAT0004509 | MIRT038760 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044505 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-183-5p | MIMAT0000261 | MIRT047068 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-100-5p | MIMAT0000098 | MIRT048461 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
