HCSGD entry for TNRC6C
1. General information
| Official gene symbol | TNRC6C |
|---|---|
| Entrez ID | 57690 |
| Gene full name | trinucleotide repeat containing 6C |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0001706 | Endoderm formation | IEA | biological_process |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0007173 | Epidermal growth factor receptor signaling pathway | TAS | biological_process |
| GO:0007219 | Notch signaling pathway | TAS | biological_process |
| GO:0008543 | Fibroblast growth factor receptor signaling pathway | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0035162 | Embryonic hemopoiesis | IEA | biological_process |
| GO:0035278 | Negative regulation of translation involved in gene silencing by miRNA | TAS | biological_process |
| GO:0038095 | Fc-epsilon receptor signaling pathway | TAS | biological_process |
| GO:0045087 | Innate immune response | TAS | biological_process |
| GO:0048011 | Neurotrophin TRK receptor signaling pathway | TAS | biological_process |
| GO:0048015 | Phosphatidylinositol-mediated signaling | TAS | biological_process |
| GO:0060213 | Positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | IDA | biological_process |
| GO:0060964 | Regulation of gene silencing by miRNA | IEA | biological_process |
| GO:1900153 | Positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4835612287 | 0.8054130086 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0642271537 |
| GSE13712_SHEAR | Down | -0.1512583576 |
| GSE13712_STATIC | Down | -0.1745358469 |
| GSE19018 | Down | -0.0280058968 |
| GSE19899_A1 | Down | -0.0481046941 |
| GSE19899_A2 | Down | -0.1836652037 |
| PubMed_21979375_A1 | Down | -0.1199486951 |
| PubMed_21979375_A2 | Down | -0.1368198153 |
| GSE35957 | Down | -0.2649582910 |
| GSE36640 | Down | -0.1584121905 |
| GSE54402 | Up | 0.1530622455 |
| GSE9593 | Up | 0.0229307869 |
| GSE43922 | Up | 0.0545617545 |
| GSE24585 | Up | 0.4493204463 |
| GSE37065 | Down | -0.0047664966 |
| GSE28863_A1 | Up | 0.4292236167 |
| GSE28863_A2 | Up | 0.3418817853 |
| GSE28863_A3 | Up | 0.0389640406 |
| GSE28863_A4 | Up | 0.1192445417 |
| GSE48662 | Up | 0.0991938994 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30b-5p | MIMAT0000420 | MIRT023444 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
