HCSGD entry for CALCOCO1

1. General information

Official gene symbolCALCOCO1
Entrez ID57658
Gene full namecalcium binding and coiled-coil domain 1
Other gene symbolsCocoa calphoglin
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000790Nuclear chromatinIEAcellular_component
GO:0003682Chromatin bindingIEAmolecular_function
GO:0003712Transcription cofactor activityIDAmolecular_function
GO:0003713Transcription coactivator activityIEA IMP ISSmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005737CytoplasmIDAcellular_component
GO:0006351Transcription, DNA-templatedIEA ISSbiological_process
GO:0007165Signal transductionISSbiological_process
GO:0008013Beta-catenin bindingIPImolecular_function
GO:0008022Protein C-terminus bindingIPImolecular_function
GO:0016055Wnt signaling pathwayIEAbiological_process
GO:0030374Ligand-dependent nuclear receptor transcription coactivator activityIDAmolecular_function
GO:0030518Intracellular steroid hormone receptor signaling pathwayIEA ISSbiological_process
GO:0043231Intracellular membrane-bounded organelleIDAcellular_component
GO:0043565Sequence-specific DNA bindingIDAmolecular_function
GO:0044212Transcription regulatory region DNA bindingIDAmolecular_function
GO:0045893Positive regulation of transcription, DNA-templatedIMPbiological_process
GO:0045944Positive regulation of transcription from RNA polymerase II promoterIEAbiological_process
GO:0070016Armadillo repeat domain bindingIPImolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.00068209790.94092941000.07510375001.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0597022953
GSE13712_SHEARDown-0.5175077302
GSE13712_STATICDown-0.3317586462
GSE19018Up1.3453973948
GSE19899_A1Up0.4469494028
GSE19899_A2Up0.7158446818
PubMed_21979375_A1Up1.3077323950
PubMed_21979375_A2Up2.0291858500
GSE35957Up0.9981292756
GSE36640Up2.7392423530
GSE54402Up0.0955802051
GSE9593Up0.8368305554
GSE43922Up0.1096959237
GSE24585Up1.3376333883
GSE37065Up0.0257088401
GSE28863_A1Up0.0151824977
GSE28863_A2Up0.0378126108
GSE28863_A3Up0.2718297079
GSE28863_A4Down-0.1271290226
GSE48662Up0.5884792368

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.