HCSGD entry for LRFN1

1. General information

Official gene symbolLRFN1
Entrez ID57622
Gene full nameleucine rich repeat and fibronectin type III domain containing 1
Other gene symbolsSALM2
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0014069Postsynaptic densityIEAcellular_component
GO:0016021Integral component of membraneIEAcellular_component
GO:0030054Cell junctionIEAcellular_component
GO:0045211Postsynaptic membraneIEAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.69161341890.38170821020.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0497531864
GSE13712_SHEARDown-0.2625716479
GSE13712_STATICDown-0.0442525929
GSE19018Up0.0576770680
GSE19899_A1Up0.0907488949
GSE19899_A2Up0.1956000139
PubMed_21979375_A1Up0.0813019051
PubMed_21979375_A2Up0.0740297398
GSE35957Up0.0909028164
GSE36640Down-0.2008828849
GSE54402Down-0.0328018266
GSE9593Down-0.0814162721
GSE43922Up0.0274822011
GSE24585Down-0.6367308218
GSE37065Up0.0076658929
GSE28863_A1Down-0.1331317115
GSE28863_A2Down-0.2234842078
GSE28863_A3Up0.3364231119
GSE28863_A4Up0.1838665306
GSE48662Down-0.0312633014

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-10a-5pMIMAT0000253MIRT047689CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.