HCSGD entry for TSHZ3
1. General information
| Official gene symbol | TSHZ3 |
|---|---|
| Entrez ID | 57616 |
| Gene full name | teashirt zinc finger homeobox 3 |
| Other gene symbols | TSH3 ZNF537 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001656 | Metanephros development | IEA | biological_process |
| GO:0001657 | Ureteric bud development | IEA | biological_process |
| GO:0001701 | In utero embryonic development | IEA | biological_process |
| GO:0002087 | Regulation of respiratory gaseous exchange by neurological system process | ISS | biological_process |
| GO:0003682 | Chromatin binding | IDA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005739 | Mitochondrion | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0030324 | Lung development | IEA | biological_process |
| GO:0030426 | Growth cone | IEA | cellular_component |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0045892 | Negative regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0050881 | Musculoskeletal movement | IEA | biological_process |
| GO:0050975 | Sensory perception of touch | IEA | biological_process |
| GO:0051152 | Positive regulation of smooth muscle cell differentiation | IEA | biological_process |
| GO:0060993 | Kidney morphogenesis | IEA | biological_process |
| GO:0072105 | Ureteric peristalsis | IEA | biological_process |
| GO:0072193 | Ureter smooth muscle cell differentiation | IEA | biological_process |
| GO:0072195 | Kidney smooth muscle cell differentiation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9542609969 | 0.0030539911 | 0.9999902473 | 0.1111813278 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3874203920 |
| GSE13712_SHEAR | Down | -2.3091691852 |
| GSE13712_STATIC | Down | -1.1892039570 |
| GSE19018 | Up | 0.2019204811 |
| GSE19899_A1 | Down | -0.9509411417 |
| GSE19899_A2 | Down | -1.6870058013 |
| PubMed_21979375_A1 | Down | -1.6183582442 |
| PubMed_21979375_A2 | Down | -1.0721877941 |
| GSE35957 | Up | 0.7338851798 |
| GSE36640 | Down | -0.6671993208 |
| GSE54402 | Down | -0.1499359803 |
| GSE9593 | Up | 0.2563641396 |
| GSE43922 | Down | -0.9347330855 |
| GSE24585 | Down | -0.1685540365 |
| GSE37065 | Up | 0.0531028486 |
| GSE28863_A1 | Up | 0.0497933050 |
| GSE28863_A2 | Up | 0.1356770824 |
| GSE28863_A3 | Up | 0.1285130030 |
| GSE28863_A4 | Up | 0.0163897603 |
| GSE48662 | Down | -0.2485389034 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT004604 | Luciferase reporter assay | Functional MTI | 19177201 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030966 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-30b-5p | MIMAT0000420 | MIRT046112 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050311 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
