HCSGD entry for GATAD2B
1. General information
| Official gene symbol | GATAD2B |
|---|---|
| Entrez ID | 57459 |
| Gene full name | GATA zinc finger domain containing 2B |
| Other gene symbols | MRD18 P66beta RP11-216N14.6 p68 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016607 | Nuclear speck | IEA | cellular_component |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3291493864 | 0.1699994111 | 0.9999902473 | 0.7976545714 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2224587496 |
| GSE13712_SHEAR | Down | -0.2366012487 |
| GSE13712_STATIC | Down | -0.2126655405 |
| GSE19018 | Up | 0.2211967747 |
| GSE19899_A1 | Up | 0.1402244799 |
| GSE19899_A2 | Down | -0.4595234363 |
| PubMed_21979375_A1 | Down | -0.6001527767 |
| PubMed_21979375_A2 | Down | -0.1176659668 |
| GSE35957 | Up | 0.2510060495 |
| GSE36640 | Up | 0.1734408503 |
| GSE54402 | Down | -0.3276824212 |
| GSE9593 | Down | -0.3847834813 |
| GSE43922 | Down | -0.0172532844 |
| GSE24585 | Up | 0.4856328319 |
| GSE37065 | Up | 0.0311216099 |
| GSE28863_A1 | Up | 0.4506244204 |
| GSE28863_A2 | Up | 0.8813047931 |
| GSE28863_A3 | Up | 0.0501476124 |
| GSE28863_A4 | Down | -0.4428737015 |
| GSE48662 | Up | 0.2304218341 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-590-3p | MIMAT0004801 | MIRT016222 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-181a-5p | MIMAT0000256 | MIRT025107 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-32-5p | MIMAT0000090 | MIRT028270 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028420 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037452 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-505-5p | MIMAT0004776 | MIRT037973 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-221-5p | MIMAT0004568 | MIRT038664 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-766-3p | MIMAT0003888 | MIRT039049 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041587 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041765 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043393 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-365a-3p | MIMAT0000710 | MIRT044043 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045229 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-221-3p | MIMAT0000278 | MIRT046962 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7c-5p | MIMAT0000064 | MIRT051773 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1260b | MIMAT0015041 | MIRT052690 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
