HCSGD entry for PSMD13

1. General information

Official gene symbolPSMD13
Entrez ID5719
Gene full nameproteasome (prosome, macropain) 26S subunit, non-ATPase, 13
Other gene symbolsHSPC027 Rpn9 S11 p40.5
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000082G1/S transition of mitotic cell cycleTASbiological_process
GO:0000209Protein polyubiquitinationTASbiological_process
GO:0000278Mitotic cell cycleTASbiological_process
GO:0000502Proteasome complexTAScellular_component
GO:0002474Antigen processing and presentation of peptide antigen via MHC class ITASbiological_process
GO:0002479Antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependentTASbiological_process
GO:0005654NucleoplasmTAScellular_component
GO:0005829CytosolTAScellular_component
GO:0005838Proteasome regulatory particleIEAcellular_component
GO:0006521Regulation of cellular amino acid metabolic processTASbiological_process
GO:0006915Apoptotic processTASbiological_process
GO:0006977DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrestTASbiological_process
GO:0007127Meiosis IIEAbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0016032Viral processTASbiological_process
GO:0016070RNA metabolic processTASbiological_process
GO:0016071MRNA metabolic processTASbiological_process
GO:0022624Proteasome accessory complexISScellular_component
GO:0031145Anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processTASbiological_process
GO:0034641Cellular nitrogen compound metabolic processTASbiological_process
GO:0042590Antigen processing and presentation of exogenous peptide antigen via MHC class ITASbiological_process
GO:0042981Regulation of apoptotic processTASbiological_process
GO:0043066Negative regulation of apoptotic processTASbiological_process
GO:0044281Small molecule metabolic processTASbiological_process
GO:0051436Negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycleTASbiological_process
GO:0051437Positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycleTASbiological_process
GO:0051439Regulation of ubiquitin-protein ligase activity involved in mitotic cell cycleTASbiological_process
Entries Per Page
Displaying Page of

4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.11303372210.77222290570.69235763151.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.3364383269
GSE13712_SHEARDown-0.0811769768
GSE13712_STATICUp0.0445506452
GSE19018Up0.0803695995
GSE19899_A1Up0.3251292711
GSE19899_A2Up0.2299270313
PubMed_21979375_A1Up0.0610030927
PubMed_21979375_A2Down-0.0218015999
GSE35957Down-0.2385415265
GSE36640Up0.0347405251
GSE54402Up0.5490066824
GSE9593Down-0.2703320447
GSE43922Up0.3180833136
GSE24585Down-0.1008008932
GSE37065Down-0.1488204256
GSE28863_A1Up0.1743266567
GSE28863_A2Down-0.2857054369
GSE28863_A3Up0.6219298007
GSE28863_A4Down-0.1787255727
GSE48662Down-0.0423939053

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-93-3pMIMAT0004509MIRT038884CLASHFunctional MTI (Weak)23622248
hsa-miR-615-3pMIMAT0003283MIRT040064CLASHFunctional MTI (Weak)23622248
hsa-miR-186-5pMIMAT0000456MIRT045260CLASHFunctional MTI (Weak)23622248
hsa-miR-183-5pMIMAT0000261MIRT047134CLASHFunctional MTI (Weak)23622248
hsa-miR-10b-5pMIMAT0000254MIRT047503CLASHFunctional MTI (Weak)23622248
hsa-miR-10a-5pMIMAT0000253MIRT047716CLASHFunctional MTI (Weak)23622248
Entries Per Page
Displaying Page of
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.