HCSGD entry for TRIM54
1. General information
| Official gene symbol | TRIM54 |
|---|---|
| Entrez ID | 57159 |
| Gene full name | tripartite motif containing 54 |
| Other gene symbols | MURF MURF-3 RNF30 muRF3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004871 | Signal transducer activity | NAS | molecular_function |
| GO:0005874 | Microtubule | NAS | cellular_component |
| GO:0005875 | Microtubule associated complex | IEA | cellular_component |
| GO:0007017 | Microtubule-based process | NAS | biological_process |
| GO:0007026 | Negative regulation of microtubule depolymerization | NAS | biological_process |
| GO:0007165 | Signal transduction | NAS | biological_process |
| GO:0007275 | Multicellular organismal development | IEA | biological_process |
| GO:0008017 | Microtubule binding | IEA | molecular_function |
| GO:0008270 | Zinc ion binding | NAS | molecular_function |
| GO:0030018 | Z disc | IEA | cellular_component |
| GO:0030154 | Cell differentiation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5632280271 | 0.8327036397 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1365874627 |
| GSE13712_SHEAR | Down | -0.1151587117 |
| GSE13712_STATIC | Up | 0.1630479776 |
| GSE19018 | Up | 0.1024478347 |
| GSE19899_A1 | Up | 0.0148782472 |
| GSE19899_A2 | Up | 0.1569627280 |
| PubMed_21979375_A1 | Down | -0.0709972747 |
| PubMed_21979375_A2 | Down | -0.0998227316 |
| GSE35957 | Down | -0.0026838640 |
| GSE36640 | Up | 0.4072653837 |
| GSE54402 | Up | 0.0115813970 |
| GSE9593 | Up | 0.0509639746 |
| GSE43922 | Up | 0.0253425796 |
| GSE24585 | Down | -0.1241572279 |
| GSE37065 | Down | -0.1132907243 |
| GSE28863_A1 | Down | -0.0261900170 |
| GSE28863_A2 | Down | -0.1340240225 |
| GSE28863_A3 | Down | -0.0793856543 |
| GSE28863_A4 | Up | 0.1774099117 |
| GSE48662 | Up | 0.3100536462 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
