HCSGD entry for PHTF2
1. General information
| Official gene symbol | PHTF2 |
|---|---|
| Entrez ID | 57157 |
| Gene full name | putative homeodomain transcription factor 2 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8169712739 | 0.0116246609 | 0.9999902473 | 0.2129326147 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1028458972 |
| GSE13712_SHEAR | Up | 0.2920563979 |
| GSE13712_STATIC | Up | 0.3074440768 |
| GSE19018 | Down | -0.8025262163 |
| GSE19899_A1 | Down | -0.3479935744 |
| GSE19899_A2 | Down | -1.2995867488 |
| PubMed_21979375_A1 | Down | -2.0264029647 |
| PubMed_21979375_A2 | Down | -1.1332854863 |
| GSE35957 | Up | 0.7618800024 |
| GSE36640 | Up | 0.0168270896 |
| GSE54402 | Down | -0.9932093108 |
| GSE9593 | Up | 0.0856720434 |
| GSE43922 | Down | -0.6249804303 |
| GSE24585 | Up | 0.2891082503 |
| GSE37065 | Down | -0.2822798187 |
| GSE28863_A1 | Down | -0.1043399953 |
| GSE28863_A2 | Up | 0.2760666000 |
| GSE28863_A3 | Down | -0.4538615497 |
| GSE28863_A4 | Down | -0.0346297818 |
| GSE48662 | Down | -0.0566368180 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019936 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024857 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026592 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052402 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
