HCSGD entry for RPGRIP1
1. General information
| Official gene symbol | RPGRIP1 |
|---|---|
| Entrez ID | 57096 |
| Gene full name | retinitis pigmentosa GTPase regulator interacting protein 1 |
| Other gene symbols | CORD13 LCA6 RGI1 RGRIP RPGRIP RPGRIP1d |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005930 | Axoneme | IEA | cellular_component |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0031513 | Nonmotile primary cilium | IEA | cellular_component |
| GO:0042462 | Eye photoreceptor cell development | IEA | biological_process |
| GO:0050896 | Response to stimulus | IEA | biological_process |
| GO:0060041 | Retina development in camera-type eye | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7082012651 | 0.8545992250 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0200909288 |
| GSE13712_SHEAR | Up | 0.0165201689 |
| GSE13712_STATIC | Down | -0.0287433890 |
| GSE19018 | Down | -0.0217898609 |
| GSE19899_A1 | Up | 0.1011678857 |
| GSE19899_A2 | Up | 0.0976062926 |
| PubMed_21979375_A1 | Down | -0.0856458652 |
| PubMed_21979375_A2 | Down | -0.0978824540 |
| GSE35957 | Up | 0.3183039002 |
| GSE36640 | Down | -0.1572921138 |
| GSE54402 | Up | 0.0523227435 |
| GSE9593 | Down | -0.0565699938 |
| GSE43922 | Up | 0.0394796208 |
| GSE24585 | Up | 0.3247237259 |
| GSE37065 | Down | -0.0596177462 |
| GSE28863_A1 | Down | -0.0593162924 |
| GSE28863_A2 | Down | -0.0043992114 |
| GSE28863_A3 | Up | 0.0809394549 |
| GSE28863_A4 | Down | -0.0099016854 |
| GSE48662 | Up | 0.0958968721 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029762 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
