HCSGD entry for CCDC47
1. General information
| Official gene symbol | CCDC47 |
|---|---|
| Entrez ID | 57003 |
| Gene full name | coiled-coil domain containing 47 |
| Other gene symbols | MSTP041 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0006983 | ER overload response | IEA | biological_process |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0009790 | Embryo development | IEA | biological_process |
| GO:0009791 | Post-embryonic development | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0055074 | Calcium ion homeostasis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0138506782 | 0.9921827780 | 0.2937043965 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2098091553 |
| GSE13712_SHEAR | Up | 0.6010402121 |
| GSE13712_STATIC | Up | 0.8489596169 |
| GSE19018 | Up | 0.0597127647 |
| GSE19899_A1 | Up | 0.4922102845 |
| GSE19899_A2 | Up | 0.4962351816 |
| PubMed_21979375_A1 | Up | 0.2911665897 |
| PubMed_21979375_A2 | Up | 0.4963703630 |
| GSE35957 | Up | 0.1468343699 |
| GSE36640 | Up | 0.3862935132 |
| GSE54402 | Up | 0.1680644743 |
| GSE9593 | Up | 0.1364396833 |
| GSE43922 | Up | 0.4194506388 |
| GSE24585 | Down | -0.0646963073 |
| GSE37065 | Up | 0.0073956831 |
| GSE28863_A1 | Down | -0.0836671985 |
| GSE28863_A2 | Up | 0.2896275592 |
| GSE28863_A3 | Down | -0.3378847058 |
| GSE28863_A4 | Up | 0.2206293310 |
| GSE48662 | Up | 0.4987716388 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024703 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-196a-5p | MIMAT0000226 | MIRT026099 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026510 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-1226-3p | MIMAT0005577 | MIRT036426 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-500a-3p | MIMAT0002871 | MIRT041146 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041791 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-106b-5p | MIMAT0000680 | MIRT044362 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046635 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-106a-5p | MIMAT0000103 | MIRT048350 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT048890 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050615 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-5p | MIMAT0000070 | MIRT051015 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
