HCSGD entry for XAB2
1. General information
| Official gene symbol | XAB2 |
|---|---|
| Entrez ID | 56949 |
| Gene full name | XPA binding protein 2 |
| Other gene symbols | HCNP HCRN NTC90 SYF1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000398 | MRNA splicing, via spliceosome | IC | biological_process |
| GO:0001824 | Blastocyst development | IEA | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005634 | Nucleus | IC | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0006281 | DNA repair | TAS | biological_process |
| GO:0006283 | Transcription-coupled nucleotide-excision repair | IDA TAS | biological_process |
| GO:0006289 | Nucleotide-excision repair | TAS | biological_process |
| GO:0006351 | Transcription, DNA-templated | IDA | biological_process |
| GO:0006396 | RNA processing | IEA | biological_process |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0533622849 | 0.8804361726 | 0.5053089536 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1965211828 |
| GSE13712_SHEAR | Up | 0.1098966414 |
| GSE13712_STATIC | Up | 0.4184653603 |
| GSE19018 | Up | 0.0197128247 |
| GSE19899_A1 | Up | 0.1398081047 |
| GSE19899_A2 | Up | 0.5574227158 |
| PubMed_21979375_A1 | Down | -0.1465752484 |
| PubMed_21979375_A2 | Up | 2.7473190403 |
| GSE35957 | Down | -0.3051961981 |
| GSE36640 | Up | 0.0209702074 |
| GSE54402 | Up | 0.1360738775 |
| GSE9593 | Down | -0.3619773725 |
| GSE43922 | Up | 0.0077523926 |
| GSE24585 | Up | 0.2336511449 |
| GSE37065 | Up | 0.0228219096 |
| GSE28863_A1 | Up | 0.1009404936 |
| GSE28863_A2 | Up | 0.1262163542 |
| GSE28863_A3 | Down | -0.0425026084 |
| GSE28863_A4 | Up | 0.0553313103 |
| GSE48662 | Up | 0.1244436951 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
