HCSGD entry for SMCO4
1. General information
| Official gene symbol | SMCO4 |
|---|---|
| Entrez ID | 56935 |
| Gene full name | single-pass membrane protein with coiled-coil domains 4 |
| Other gene symbols | C11orf75 FN5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9771169598 | 0.0051672581 | 0.9999902473 | 0.1460320856 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.7243195733 |
| GSE13712_SHEAR | Down | -0.6922694689 |
| GSE13712_STATIC | Down | -0.6322020935 |
| GSE19018 | Down | -0.1872717355 |
| GSE19899_A1 | Down | -0.3074864552 |
| GSE19899_A2 | Down | -0.5093149274 |
| PubMed_21979375_A1 | Up | 0.5196342992 |
| PubMed_21979375_A2 | Down | -1.2725173244 |
| GSE35957 | Down | -0.1311536971 |
| GSE36640 | Down | -1.1161491008 |
| GSE54402 | Down | -0.2689001575 |
| GSE9593 | Down | -0.9623845431 |
| GSE43922 | Up | 0.3720199277 |
| GSE24585 | Down | -0.0535005908 |
| GSE37065 | Down | -0.6576978891 |
| GSE28863_A1 | Down | -0.0932193934 |
| GSE28863_A2 | Down | -0.1712103406 |
| GSE28863_A3 | Down | -0.1747596188 |
| GSE28863_A4 | Up | 0.0022560324 |
| GSE48662 | Up | 0.1629628558 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT004895 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT004895 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016301 | Microarray | Functional MTI (Weak) | 20304954 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
