HCSGD entry for PRPH
1. General information
| Official gene symbol | PRPH |
|---|---|
| Entrez ID | 5630 |
| Gene full name | peripherin |
| Other gene symbols | NEF4 PRPH1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005198 | Structural molecule activity | IEA | molecular_function |
| GO:0005882 | Intermediate filament | TAS | cellular_component |
| GO:0005883 | Neurofilament | IEA | cellular_component |
| GO:0042622 | Photoreceptor outer segment membrane | IEA | cellular_component |
| GO:0044299 | C-fiber | IEA | cellular_component |
| GO:0045098 | Type III intermediate filament | IEA | cellular_component |
| GO:0045104 | Intermediate filament cytoskeleton organization | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1512666540 | 0.9342224574 | 0.7764215289 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0803744779 |
| GSE13712_SHEAR | Up | 0.0245935533 |
| GSE13712_STATIC | Up | 0.3843695367 |
| GSE19018 | Up | 0.2105169114 |
| GSE19899_A1 | Up | 0.1512678293 |
| GSE19899_A2 | Up | 0.2297493416 |
| PubMed_21979375_A1 | Up | 0.2682140073 |
| PubMed_21979375_A2 | Down | -0.1771153030 |
| GSE35957 | Up | 0.2530897486 |
| GSE36640 | Up | 0.2034787419 |
| GSE54402 | Up | 0.0945442750 |
| GSE9593 | Down | -0.0160786425 |
| GSE43922 | Up | 0.0273926123 |
| GSE24585 | Up | 0.2647312824 |
| GSE37065 | Down | -0.0737767234 |
| GSE28863_A1 | Down | -0.2763777074 |
| GSE28863_A2 | Down | -0.1234333801 |
| GSE28863_A3 | Up | 0.4443983856 |
| GSE28863_A4 | Up | 0.1818040725 |
| GSE48662 | Down | -0.0200828115 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022594 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
