HCSGD entry for PCDHB4
1. General information
| Official gene symbol | PCDHB4 |
|---|---|
| Entrez ID | 56131 |
| Gene full name | protocadherin beta 4 |
| Other gene symbols | PCDH-BETA4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IDA | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0007155 | Cell adhesion | TAS | biological_process |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0007268 | Synaptic transmission | TAS | biological_process |
| GO:0007399 | Nervous system development | TAS | biological_process |
| GO:0007416 | Synapse assembly | TAS | biological_process |
| GO:0016021 | Integral component of membrane | NAS | cellular_component |
| GO:0016339 | Calcium-dependent cell-cell adhesion | NAS | biological_process |
| GO:0045111 | Intermediate filament cytoskeleton | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0686784887 | 0.8435959120 | 0.5623709997 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0880790157 |
| GSE13712_SHEAR | Down | -0.2236605678 |
| GSE13712_STATIC | Up | 0.0152059990 |
| GSE19018 | Down | -0.0160721242 |
| GSE19899_A1 | Up | 0.1540094560 |
| GSE19899_A2 | Down | -0.0981557694 |
| PubMed_21979375_A1 | Down | -0.0552377523 |
| PubMed_21979375_A2 | Down | -0.0060341826 |
| GSE35957 | Up | 0.3521120995 |
| GSE36640 | Up | 0.1085882617 |
| GSE54402 | Up | 0.0742799354 |
| GSE9593 | Up | 0.1045753522 |
| GSE43922 | Up | 0.0191952488 |
| GSE24585 | Up | 0.1118265686 |
| GSE37065 | Up | 0.0951084929 |
| GSE28863_A1 | Up | 1.3238222898 |
| GSE28863_A2 | Up | 1.4168934136 |
| GSE28863_A3 | Up | 0.1398187920 |
| GSE28863_A4 | Up | 0.0202406130 |
| GSE48662 | Down | -0.1239614334 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
