HCSGD entry for PCDHB6


1. General information

Official gene symbolPCDHB6
Entrez ID56130
Gene full nameprotocadherin beta 6
Other gene symbolsPCDH-BETA6
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005509Calcium ion bindingIEAmolecular_function
GO:0005886Plasma membraneIEAcellular_component
GO:0005887Integral component of plasma membraneTAScellular_component
GO:0007155Cell adhesionTASbiological_process
GO:0007156Homophilic cell adhesionIEAbiological_process
GO:0007268Synaptic transmissionTASbiological_process
GO:0007399Nervous system developmentTASbiological_process
GO:0007416Synapse assemblyTASbiological_process
GO:0016021Integral component of membraneIEA NAScellular_component
GO:0016339Calcium-dependent cell-cell adhesionNASbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.35229576380.19993764290.99999024730.8651541064

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0347438118
GSE13712_SHEARDown-0.0797749735
GSE13712_STATICUp0.0124233918
GSE19018Up0.0121272136
GSE19899_A1Down-0.1887899881
GSE19899_A2Down-0.9964555527
PubMed_21979375_A1Up0.1159403476
PubMed_21979375_A2Down-0.5871763054
GSE35957Down-0.1132022278
GSE36640Up0.6140838258
GSE54402Down-0.3702356471
GSE9593Down-0.0171488062
GSE43922Down-0.1281211841
GSE24585Up0.7128591119
GSE37065Down-0.1808810028
GSE28863_A1Up0.1717538005
GSE28863_A2Down-0.0941096624
GSE28863_A3Up0.4300758460
GSE28863_A4Up0.2252567011
GSE48662Down-0.1018182207

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.