HCSGD entry for SMG9
1. General information
| Official gene symbol | SMG9 |
|---|---|
| Entrez ID | 56006 |
| Gene full name | smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) |
| Other gene symbols | C19orf61 F17127_1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000184 | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IMP TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0042802 | Identical protein binding | IPI | molecular_function |
Entries Per Page
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8587192736 | 0.3571666882 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0013953075 |
| GSE13712_SHEAR | Down | -0.0400728224 |
| GSE13712_STATIC | Down | -0.1542483754 |
| GSE19018 | Up | 0.0102479253 |
| GSE19899_A1 | Down | -0.0657791822 |
| GSE19899_A2 | Down | -0.3705372939 |
| PubMed_21979375_A1 | Down | -0.1154288703 |
| PubMed_21979375_A2 | Down | -0.2751762801 |
| GSE35957 | Down | -0.0438628013 |
| GSE36640 | Up | 0.0517885281 |
| GSE54402 | Up | 0.0522810762 |
| GSE9593 | Up | 0.1242981733 |
| GSE43922 | Down | -0.0572936953 |
| GSE24585 | Down | -0.0056408661 |
| GSE37065 | Down | -0.0841076974 |
| GSE28863_A1 | Up | 0.2657116335 |
| GSE28863_A2 | Down | -0.0003071733 |
| GSE28863_A3 | Up | 0.0861887187 |
| GSE28863_A4 | Down | -0.2332275950 |
| GSE48662 | Up | 0.3169598520 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
