HCSGD entry for ZMAT5
1. General information
| Official gene symbol | ZMAT5 |
|---|---|
| Entrez ID | 55954 |
| Gene full name | zinc finger, matrin-type 5 |
| Other gene symbols | SNRNP20 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0008380 | RNA splicing | IC | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3662443562 | 0.7769624824 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0866202621 |
| GSE13712_SHEAR | Down | -0.2735952123 |
| GSE13712_STATIC | Down | -0.1407975743 |
| GSE19018 | Up | 0.0792003746 |
| GSE19899_A1 | Up | 0.1005861913 |
| GSE19899_A2 | Up | 0.5037219814 |
| PubMed_21979375_A1 | Up | 0.2989091317 |
| PubMed_21979375_A2 | Up | 0.4269951869 |
| GSE35957 | Up | 0.0255640788 |
| GSE36640 | Up | 0.1045978083 |
| GSE54402 | Up | 0.1632715889 |
| GSE9593 | Down | -0.1640352710 |
| GSE43922 | Up | 0.1082638030 |
| GSE24585 | Down | -0.0094017329 |
| GSE37065 | Down | -0.1569503039 |
| GSE28863_A1 | Down | -0.2821516082 |
| GSE28863_A2 | Up | 0.0412402535 |
| GSE28863_A3 | Down | -0.1452349409 |
| GSE28863_A4 | Up | 0.1497407565 |
| GSE48662 | Up | 0.0379330272 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-296-3p | MIMAT0004679 | MIRT038494 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042144 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
