HCSGD entry for LMO3
1. General information
| Official gene symbol | LMO3 |
|---|---|
| Entrez ID | 55885 |
| Gene full name | LIM domain only 3 (rhombotin-like 2) |
| Other gene symbols | RBTN3 RBTNL2 RHOM3 Rhom-3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9462286045 | 0.2346297595 | 0.9999902473 | 0.9327427730 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0372476958 |
| GSE13712_SHEAR | Down | -0.0099279907 |
| GSE13712_STATIC | Up | 0.0374296783 |
| GSE19018 | Down | -0.1362497126 |
| GSE19899_A1 | Down | -0.0273166953 |
| GSE19899_A2 | Down | -0.0877801682 |
| PubMed_21979375_A1 | Down | -0.0564992612 |
| PubMed_21979375_A2 | Up | 0.0100242367 |
| GSE35957 | Up | 0.1209010387 |
| GSE36640 | Up | 0.0398700364 |
| GSE54402 | Down | -0.0200299622 |
| GSE9593 | Down | -0.1013123986 |
| GSE43922 | Down | -0.8284120099 |
| GSE24585 | Up | 0.0134581286 |
| GSE37065 | Down | -0.0850476910 |
| GSE28863_A1 | Down | -0.0453579681 |
| GSE28863_A2 | Down | -0.0643492441 |
| GSE28863_A3 | Up | 0.0492731027 |
| GSE28863_A4 | Down | -0.0737432738 |
| GSE48662 | Down | -0.0810122497 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017853 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
