HCSGD entry for USE1
1. General information
| Official gene symbol | USE1 |
|---|---|
| Entrez ID | 55850 |
| Gene full name | unconventional SNARE in the ER 1 homolog (S. cerevisiae) |
| Other gene symbols | P31 SLT1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005764 | Lysosome | ISS | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0006888 | ER to Golgi vesicle-mediated transport | ISS | biological_process |
| GO:0007041 | Lysosomal transport | ISS | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030163 | Protein catabolic process | ISS | biological_process |
| GO:0032940 | Secretion by cell | ISS | biological_process |
| GO:0060628 | Regulation of ER to Golgi vesicle-mediated transport | IEA | biological_process |
| GO:0071786 | Endoplasmic reticulum tubular network organization | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9002087383 | 0.0269568367 | 0.9999902473 | 0.3137899646 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1438608525 |
| GSE13712_SHEAR | Up | 0.2938668749 |
| GSE13712_STATIC | Down | -0.3742119441 |
| GSE19018 | Down | -0.2703549264 |
| GSE19899_A1 | Down | -0.1147564960 |
| GSE19899_A2 | Down | -0.7838518578 |
| PubMed_21979375_A1 | Up | 0.2504211329 |
| PubMed_21979375_A2 | Down | -0.5332683990 |
| GSE35957 | Down | -0.0893330723 |
| GSE36640 | Up | 0.0216789264 |
| GSE54402 | Down | -0.0971316282 |
| GSE9593 | Down | -0.0740121479 |
| GSE43922 | Down | -0.3531144610 |
| GSE24585 | Down | -0.3003184842 |
| GSE37065 | Down | -0.1959017170 |
| GSE28863_A1 | Down | -0.5038203881 |
| GSE28863_A2 | Down | -0.4910783253 |
| GSE28863_A3 | Up | 0.3520706235 |
| GSE28863_A4 | Up | 0.1521281200 |
| GSE48662 | Up | 0.0689646682 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028623 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051637 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
