HCSGD entry for BDP1
1. General information
| Official gene symbol | BDP1 |
|---|---|
| Entrez ID | 55814 |
| Gene full name | B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB |
| Other gene symbols | HSA238520 TAF3B1 TFC5 TFIIIB'' TFIIIB150 TFIIIB90 TFNR |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003682 | Chromatin binding | IEA | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0006383 | Transcription from RNA polymerase III promoter | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2027279169 | 0.6809470879 | 0.8692937795 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0957605299 |
| GSE13712_SHEAR | Up | 0.1192276124 |
| GSE13712_STATIC | Up | 0.1685794118 |
| GSE19018 | Down | -0.1202388489 |
| GSE19899_A1 | Up | 0.1410363641 |
| GSE19899_A2 | Down | -0.3479023797 |
| PubMed_21979375_A1 | Up | 0.2939687145 |
| PubMed_21979375_A2 | Up | 0.1097636262 |
| GSE35957 | Up | 0.0081434647 |
| GSE36640 | Up | 0.1092275198 |
| GSE54402 | Up | 0.2607336810 |
| GSE9593 | Down | -0.0603734291 |
| GSE43922 | Up | 0.0080374335 |
| GSE24585 | Down | -0.0286278764 |
| GSE37065 | Up | 0.0772067037 |
| GSE28863_A1 | Up | 0.7439904996 |
| GSE28863_A2 | Up | 0.9673331707 |
| GSE28863_A3 | Up | 0.0750908923 |
| GSE28863_A4 | Down | -0.2524658900 |
| GSE48662 | Down | -0.5794577379 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30b-5p | MIMAT0000420 | MIRT023450 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045090 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
