HCSGD entry for DDX28
1. General information
| Official gene symbol | DDX28 |
|---|---|
| Entrez ID | 55794 |
| Gene full name | DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 |
| Other gene symbols | MDDX28 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0008026 | ATP-dependent helicase activity | IEA | molecular_function |
| GO:0042645 | Mitochondrial nucleoid | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8551234034 | 0.2790485506 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0246670425 |
| GSE13712_SHEAR | Down | -0.2198459259 |
| GSE13712_STATIC | Down | -0.0267948489 |
| GSE19018 | Up | 0.1065949365 |
| GSE19899_A1 | Down | -0.0457341804 |
| GSE19899_A2 | Up | 0.1599203414 |
| PubMed_21979375_A1 | Up | 0.0255349768 |
| PubMed_21979375_A2 | Down | -0.0344279099 |
| GSE35957 | Up | 0.0995342805 |
| GSE36640 | Down | -0.2678032348 |
| GSE54402 | Up | 0.1730707568 |
| GSE9593 | Down | -0.1131761532 |
| GSE43922 | Up | 0.0748662430 |
| GSE24585 | Down | -0.5311542395 |
| GSE37065 | Up | 0.0101243763 |
| GSE28863_A1 | Down | -0.2420874077 |
| GSE28863_A2 | Down | -0.2806083057 |
| GSE28863_A3 | Down | -0.1575712418 |
| GSE28863_A4 | Up | 0.1976210234 |
| GSE48662 | Down | -0.1827789004 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT032400 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-484 | MIMAT0002174 | MIRT042050 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
